species:   Scscl
pid:       PID1611
parent:    Ssc-milR-87
paralog:   
locus:     NW_001820832.1:432068-432113
matures:   ['UGGCUUGAUUGUAGUCUGG', 'CGACACUUGAGCUUGG']
srr:       SRR12527899
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram NW_001820832.1:432068-432113

7 out of bounds
14 alignments
6 proper strand
6 stranded perfect matches

********************        ******************
UUGGCUUGAUUGUAGUCUGGAUGCUAGUCUCGACACUUGAGCUUGG
..(((((((..((.(((.((((....)))).))))))))))))...
-UGGCUUGAUUGUAGUCUGG-------------------------- l=19 a=1 c
------------------------------CGACACUUGAGCUUGG l=16 a=0 c*
-UGGCUUGAUUGUAGUCUGG-------------------------- l=19 a=1 ma
------------------------------CGACACUUGAGCUUGG l=16 a=0 ma*

UUGGCUUGAUUGUAGUCUGGA------------------------- l=21 a=1 
-UGGCUUGAUUGUAGUCUGG-------------------------- l=19 a=1 (c,ma)
-UGGCUUGAUUGUAGUCUGGAUGC---------------------- l=23 a=1 
---------UUGUAGUCUGGAUGCUAGUCUC--------------- l=22 a=1 
-----------------UGGAUGCUAGUCUCGACA----------- l=18 a=1 
-----------------UGGAUGCUAGUCUCGACACU--------- l=20 a=1 

mb-01011
ax-1011001
ku-01
ss-100010011100
fn-101
